Browsing Nord Open Research Archive by Author "Fernandes, Jorge Manuel de Oliveira"
Now showing items 1-20 of 20
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Antibiotic-induced perturbations are manifested in the dominant intestinal bacterial phyla of atlantic salmon
Gupta, Shruti; Fernandes, Jorge Manuel de Oliveira; Kiron, Viswanath (Peer reviewed; Journal article, 2019)The intestinal microbiota of certain farmed fish are often exposed to antimicrobial substances, such as antibiotics, that are used to prevent and treat bacterial diseases. Antibiotics that kill or inhibit the growth of ... -
CircParser : a novel streamlined pipeline for circular RNA structure and host gene prediction in non-model organisms
Nedoluzhko, Artem; Sharko, Fedor S.; Rbbani, Md Golam; Teslyuk, Anton; Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveira (Peer reviewed; Journal article, 2020)Circular RNAs (circRNAs) are long noncoding RNAs that play a significant role in various biological processes, including embryonic development and stress responses. These regulatory molecules can modulate microRNA activity ... -
Development and validation of a liquid chromatography high-resolution mass spectrometry method for the simultaneous determination of mycotoxins and phytoestrogens in plant-based fish feed and exposed fish
Johny, Amritha; Fæste, Christiane Kruse; Bogevik, André Sture; Berge, Gerd Marit; Fernandes, Jorge Manuel de Oliveira; Ivanova, Lada (Journal article; Peer reviewed, 2019) -
Dietary protein complexity modulates growth, protein utilisation and the expression of protein digestion-related genes in Senegalese sole larvae
Canada, Paula; Conceicao, Luis E.C.; Mira, Sara; Teodosio, Rita; Fernandes, Jorge Manuel de Oliveira; Barrios, Carmen; Millan, Francisco; Pedroche, Justo; Valente, Luisa M.P.; Engrola, Sofia (Journal article; Peer reviewed, 2017) -
Differences in the fast muscle methylome provide insight into sex-specific epigenetic regulation of growth in Nile tilapia during early stages of domestication
Podgorniak, Tomasz Krzysztof; Brockmann, Sven; Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveira (Journal article; Peer reviewed, 2019) -
Exposure to Yeast Shapes the Intestinal Bacterial Community Assembly in Zebrafish Larvae
Siriyappagouder, Prabhugouda; Galindo-Villegas, Jorge; Jeppinamogeru, Lokesh; Mulero, Victoriano; Fernandes, Jorge Manuel de Oliveira; Kiron, Viswanath (Journal article; Peer reviewed, 2018) -
Growth and development of skeletal anomalies in diploid and triploid Atlantic salmon (Salmo salar) fed phosphorus-rich diets with fish meal and hydrolyzed fish protein
Peruzzi, Stefano; Puvanendran, Velmurugu; Riesen, Guido; Ripman Seim, Rudi; Hagen, Ørjan; Martinez-Llorens, Silvia; Falk-Petersen, Inger-Britt; Fernandes, Jorge Manuel de Oliveira; Jobling, Malcolm (Journal article; Peer reviewed, 2018)Diploid and triploid Atlantic salmon, Salmo salar were fed high-protein, phosphorus-rich diets (56–60% protein; ca 18g phosphorus kg-1 diet) whilst being reared at low temperature from start-feeding until parr-smolt ... -
Lactobacillus dominate in the intestine of Atlantic salmon fed dietary probiotics
Gupta, Shruti; Fečkaninová, Adriána; Jep, Lokesh; Koščová, Jana; Sørensen, Mette; Fernandes, Jorge Manuel de Oliveira; Kiron, Viswanath (Journal article; Peer reviewed, 2019) -
Larval dietary protein complexity affects the regulation of muscle growth and the expression of DNA methyltransferases in Senegalese sole
Canada, Paula; Engrola, Sofia; Mira, Sara; Teodosio, Rita; Yust, Maria del Mar; Sousa, Vera; Pedroche, Justo; Fernandes, Jorge Manuel de Oliveira; Conceicao, Luis E.C.; Valente, Luisa M.P. (Journal article; Peer reviewed, 2018) -
Low incubation temperature during early development negatively affects survival and related innate immune processes in zebrafish larvae exposed to lipopolysaccharide
Zhang, Qirui; Kopp, Martina Elisabeth Luise; Babiak, Igor; Fernandes, Jorge Manuel de Oliveira (Journal article; Peer reviewed, 2018)In many fish species, the immune system is significantly constrained by water temperature. In spite of its critical importance in protecting the host against pathogens, little is known about the influence of embryonic ... -
Macroalga-derived alginate oligosaccharide alters intestinal bacteria of atlantic salmon
Gupta, Shruti; Jep, Lokesh; Abdelhafiz, Yousri Abdelmutalab Ahmed; Siriyappagouder, Prabhugouda; Pierre, Ronan; Sørensen, Mette; Fernandes, Jorge Manuel de Oliveira; Kiron, Viswanath (Peer reviewed; Journal article, 2019)Prebiotics are substrates intended to sculpt gut microbial communities as they are selectively utilized by the microorganisms to exert beneficial health effects on hosts. Macroalga-derived oligosaccharides are candidate ... -
Major gene expression changes and epigenetic remodelling in Nile tilapia muscle after just one generation of domestication
Konstantinidis, Ioannis; Sætrom, Pål; Mjelle, Robin; Nedoluzhko, Artem; Robledo, Diego; Fernandes, Jorge Manuel de Oliveira (Peer reviewed; Journal article, 2020)The historically recent domestication of fishes has been essential to meet the protein demands of a growing human population. Selection for traits of interest during domestication is a complex process whose epigenetic basis ... -
Microsatellite analysis of five populations of Alosa braschnikowi (Borodin, 1904) across the Southern coast of the Caspian Sea
Jafari, Omid; Fernandes, Jorge Manuel de Oliveira; Hedayati, Ali-Akbar; Shabany, Ali; Nasrolahpourmoghadam, Maryam (Journal article; Peer reviewed, 2019)Genetic diversity studies are essential in characterization of populations and species conservation. Alosa braschnikowi is a commercially valuable species native to the Caspian Sea. It is thought to have eight to nine ... -
A new strain group of common carp: The genetic differences and admixture events between Cyprinus carpio breeds
Nedoluzhko, Artem; Slobodova, Natalia; Sharko, Fedor S.; Shalgimbayeva, Gulmira; Tsygankova, Svetlana V.; Boulygina, Eugenia S.; Jeney, Zsigmond; Nguyen, Van Q.; Pham, Thế T.; Nguyen, Đức T.; Volkov, Alexander; Fernandes, Jorge Manuel de Oliveira; Rastorguev, Sergey M (Peer reviewed; Journal article, 2020)Common carp (Cyprinus carpio ) has an outstanding economic importance in freshwater aquaculture due to its high adaptive capacity to both food and environment. In fact, it is the third most farmed fish species worldwide ... -
Paralogues from the expanded Tlr11 gene family in mudskipper (Boleophthalmus pectinirostris) are under positive selection and respond differently to LPS/Poly(I:C) challenge
Qiu, Heng Tong; Fernandes, Jorge Manuel de Oliveira; Hong, Wan Shu; Wu, Hai Xu; Zhang, Yu Ting; Huang, Sheng; Liu, Dong Teng; Yu, Hui; Wang, Qiong; You, Xin Xin; Chen, Shi Xi (Peer reviewed; Journal article, 2019) -
Parental micronutrient deficiency distorts liver DNA methylation and expression of lipid genes associated with a fatty-liver-like phenotype in offspring
Skjærven, Kaja Helvik; Jakt, Lars Martin; Fernandes, Jorge Manuel de Oliveira; Dahl, John Arne; Adam, Anne-Catrin; Klughammer, Johanna; Bock, Christoph; Espe, Marit (Journal article; Peer reviewed, 2018)Micronutrient status of parents can affect long term health of their progeny. Around 2 billion humans are affected by chronic micronutrient deficiency. In this study we use zebrafish as a model system to examine morphological, ... -
Pseudozyma priming influences expression of genes involved in metabolic pathways and immunity in zebrafish larvae
Siriyappagouder, Prabhugouda; Galindo-Villegas, Jorge; Dhanasiri, Anusha; Zhang, Qirui; Mulero, Victoriano; Kiron, Viswanath; Fernandes, Jorge Manuel de Oliveira (Peer reviewed; Journal article, 2020)Fungi, particularly yeasts, are known essential components of the host microbiota but their functional relevance in development of immunity and physiological processes of fish remains to be elucidated. In this study, we ... -
Shedding the light on Litopenaeus vannamei differential muscle and hepatopancreas immune responses in white spot syndrome virus (WSSV) exposure
Santos, Camilla; Andrade, Sónia; Fernandes, Jorge Manuel de Oliveira; Freitas, Patrícia (Peer reviewed; Journal article, 2020)White Spot Syndrome Virus (WSSV) is one of the main threats to farming Litopenaeus vannamei, the most important crustacean commercialized in aquaculture worldwide. Here, we performed RNA-seq analyses in hepatopancreas and ... -
Succession of embryonic and the intestinal bacterial communities of Atlantic salmon (Salmo salar) reveals stage‐specific microbial signatures
Jep, Lokesh; Kiron, Viswanath; Sipkema, Detmer; Fernandes, Jorge Manuel de Oliveira; Moum, Truls Borg (Journal article; Peer reviewed, 2018) -
The Intestinal Mycobiota in Wild Zebrafish Comprises Mainly Dothideomycetes While Saccharomycetes Predominate in Their Laboratory-Reared Counterparts
Prabhugouda, Siriyappagouder; Kiron, Viswanath; Lokesh, Jep; Rajeish, Moger; Kopp, Martina Elisabeth Luise; Fernandes, Jorge Manuel de Oliveira (Journal article; Peer reviewed, 2018)As an integral part of the resident microbial community of fish intestinal tract, the mycobiota is expected to play important roles in health and disease resistance of the host. The composition of the diverse fungal ...