Browsing Nord Open Research Archive by Author "Fernandes, Jorge Manuel de Oliveira"
Now showing items 1-20 of 50
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Adherent intestinal cells from Atlantic salmon show phagocytic ability and express macrophage-specific genes
Park, Youngjin; Zhang, Qirui; Wiegertjes, Geert Frits; Fernandes, Jorge Manuel de Oliveira; Kiron, Viswanath (Peer reviewed; Journal article, 2020)Our knowledge of the intestinal immune system of fish is rather limited compared to mammals. Very little is known about the immune cells including the phagocytic cells in fish intestine. Hence, employing imaging flow ... -
Antibiotic-induced perturbations are manifested in the dominant intestinal bacterial phyla of atlantic salmon
Gupta, Shruti; Fernandes, Jorge Manuel de Oliveira; Kiron, Viswanath (Peer reviewed; Journal article, 2019)The intestinal microbiota of certain farmed fish are often exposed to antimicrobial substances, such as antibiotics, that are used to prevent and treat bacterial diseases. Antibiotics that kill or inhibit the growth of ... -
Breeding strategy shapes the composition of bacterial communities in female Nile tilapia reared in a recirculating aquaculture system
Abdelhafiz, Yousri Abdelmutalab Ahmed; Fernandes, Jorge Manuel de Oliveira; Larger, Simone; Albanese, Davide; Donati, Claudio; Jafari, Omid; Nedoluzhko, Artem; Kiron, Viswanath (Peer reviewed; Journal article, 2021) -
Brewer’s spent dry yeast modulates immunity in gilthead sea bream (Sparus aurata)
Konstantinidis, Ioannis; Firmino, Joana P.; Ruiz, Alberto; Iñarra, Bruno; Martin, David S.; Estévez, Alicia; Fernandes, Jorge Manuel de Oliveira; Gisbert, Enric (Peer reviewed; Journal article, 2022) -
CircParser : a novel streamlined pipeline for circular RNA structure and host gene prediction in non-model organisms
Nedoluzhko, Artem; Sharko, Fedor S.; Rbbani, Md Golam; Teslyuk, Anton; Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveira (Peer reviewed; Journal article, 2020)Circular RNAs (circRNAs) are long noncoding RNAs that play a significant role in various biological processes, including embryonic development and stress responses. These regulatory molecules can modulate microRNA activity ... -
Development and validation of a liquid chromatography high-resolution mass spectrometry method for the simultaneous determination of mycotoxins and phytoestrogens in plant-based fish feed and exposed fish
Johny, Amritha; Fæste, Christiane Kruse; Bogevik, André Sture; Berge, Gerd Marit; Fernandes, Jorge Manuel de Oliveira; Ivanova, Lada (Journal article; Peer reviewed, 2019) -
Dietary protein complexity modulates growth, protein utilisation and the expression of protein digestion-related genes in Senegalese sole larvae
Canada, Paula; Conceicao, Luis E.C.; Mira, Sara; Teodosio, Rita; Fernandes, Jorge Manuel de Oliveira; Barrios, Carmen; Millan, Francisco; Pedroche, Justo; Valente, Luisa M.P.; Engrola, Sofia (Journal article; Peer reviewed, 2017) -
Differences in the fast muscle methylome provide insight into sex-specific epigenetic regulation of growth in Nile tilapia during early stages of domestication
Podgorniak, Tomasz Krzysztof; Brockmann, Sven; Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveira (Journal article; Peer reviewed, 2019) -
Digestive tract morphology and enzyme activities of juvenile diploid and triploid Atlantic salmon (Salmo salar) fed fishmealbased diets with or without fish protein hydrolysates
Martinez-Llorens, Silvia; Peruzzi, Stefano; Falk-Petersen, Inger-Britt; Godoy-Olmos, Sergio; Ulleberg, Lars Olav; Tomas-Vidal, Ana; Puvanendran, Velmurugu; Odei, Derrick Kwame; Hagen, Ørjan; Fernandes, Jorge Manuel de Oliveira; Jobling, Malcolm (Peer reviewed; Journal article, 2021)Triploid, sterile Atlantic salmon (Salmo salar) could make a contribution to the development of the farming industry, but uncertainties about the performance and welfare of triploids have limited their adoption by farmers. ... -
Distribution of the order Lampriformes in the Mediterranean Sea with notes on their biology, morphology, and taxonomy
Albano, Marco; D’Iglio, Claudio; Spanò, Nunziacarla; Fernandes, Jorge Manuel de Oliveira; Savoca, Serena; Capillo, Gioele (Peer reviewed; Journal article, 2022) -
DNA hydroxymethylation and improved growth of Nile tilapia (Oreochromis niloticus) during domestication
Konstantinidis, Ioannis (PhD in Aquatic Biosciences;no. 36, Doctoral thesis, 2020)The worldwide demand for fish consumption is highly dependent on aquaculture production because commercial fishing reached its maximum exploitation since the 90’s. However, continued expansion of the aquaculture industry ... -
Epigenetic mapping of the somatotropic axis in Nile tilapia reveals differential DNA hydroxymethylation marks associated with growth
Konstantinidis, Ioannis; Anastasiadi, Dafni; Sætrom, Pål; Nedoluzhko, Artem; Mjelle, Robin; Podgorniak, Tomasz; Piferrer, Francesc; Fernandes, Jorge Manuel de Oliveira (Peer reviewed; Journal article, 2021)In vertebrates, the somatotropic axis comprising the pituitary gland, liver and muscle plays a major role in myogenesis. Its output in terms of muscle growth is highly affected by nutritional and environmental cues, and ... -
Exposure to Yeast Shapes the Intestinal Bacterial Community Assembly in Zebrafish Larvae
Siriyappagouder, Prabhugouda; Galindo-Villegas, Jorge; Jeppinamogeru, Lokesh; Mulero, Victoriano; Fernandes, Jorge Manuel de Oliveira; Kiron, Viswanath (Journal article; Peer reviewed, 2018) -
Expression of acetylcholine, its contribution to regulation of immune function and O2 sensing and phylogenetic interpretations of the African butterfly fish Pantodon buchholzi (Osteoglossiformes, Pantodontidae)
Capillo, Gioele; Zaccone, Giacomo; Cupello, Camila; Fernandes, Jorge Manuel de Oliveira; Kiron, Viswanath; Kuciel, Michal; Zuwala, Krystyna; Guerrera, Maria Cristina; Aragona, Marialuisa; Icardo, Jose Manuel; Lauriano, Eugenia Rita (Peer reviewed; Journal article, 2021) -
Expression of the Antimicrobial Peptide Piscidin 1 and Neuropeptides in Fish Gill and Skin : A Potential Participation in Neuro-Immune Interaction
Zaccone, Giacomo; Capillo, Gioele; Fernandes, Jorge Manuel de Oliveira; Kiron, Viswanath; Lauriano, Eugenia Rita; Alesci, Alessio; Cascio, Patrizia Lo; Guerrera, Maria Cristina; Kuciel, Michal; Zuwala, Krystyna; Icardo, Jose Manuel; Ishimatsu, Atsushi; Murata, Ryosuke; Amagai, Takafumi; Germanà, Antonino; Aragona, Marialuisa (Peer reviewed; Journal article, 2022)Antimicrobial peptides (AMPs) are found widespread in nature and possess antimicrobial and immunomodulatory activities. Due to their multifunctional properties, these peptides are a focus of growing body of interest and ... -
Function of circular RNAs in fish and their potential application as biomarkers
Rbbani, Md Golam; Nedoluzhko, Artem; Galindo-Villegas, Jorge; Fernandes, Jorge Manuel de Oliveira (Peer reviewed; Journal article, 2021) -
Genetic Investigation of Aral Wild Common Carp Populations (Cyprinus carpio) Using ddRAD Sequencing
Shalgimbayeva, Gulmira; Volkov, Alexander; Slobodova, Natalia; Sharko, Fedor S.; Tsygankova, Svetlana V.; Boulygina, Eugenia S.; Nguyen, Van Q.; Pham, Thế T.; Nguyen, Duc T.; Assylbekova, Saule Zh.; Alekseev, Yakov; Nedoluzhko, Artem; Fernandes, Jorge Manuel de Oliveira; Rastorguev, Sergey (Peer reviewed; Journal article, 2021)Common carp (Cyprinus carpio) is a widespread freshwater fish species of the Cyprinidae family, one of the largest and most diverse fish families. The natural habitats of C. carpio extend from Western Europe to South-East ... -
Genotyping-by-Sequencing reveals the impact of restocking on wild common carp populations of the Southern Caspian Basin
Jafari, Omid; Zeinalabedini, Mehrshad; Robledo, Diego; Fernandes, Jorge Manuel de Oliveira; Hedayati, Ali-Akbar; Arefnezhad, Babak (Peer reviewed; Journal article, 2022) -
Growth and development of skeletal anomalies in diploid and triploid Atlantic salmon (Salmo salar) fed phosphorus-rich diets with fish meal and hydrolyzed fish protein
Peruzzi, Stefano; Puvanendran, Velmurugu; Riesen, Guido; Ripman Seim, Rudi; Hagen, Ørjan; Martinez-Llorens, Silvia; Falk-Petersen, Inger-Britt; Fernandes, Jorge Manuel de Oliveira; Jobling, Malcolm (Journal article; Peer reviewed, 2018)Diploid and triploid Atlantic salmon, Salmo salar were fed high-protein, phosphorus-rich diets (56–60% protein; ca 18g phosphorus kg-1 diet) whilst being reared at low temperature from start-feeding until parr-smolt ... -
Integration of morphometrics and machine learning enables accurate distinction between wild and farmed common carp
Jafari, Omid; Ebrahimi, M.; Hedayati, Ali-Akbar; Zeinalabedini, Mehrshad; Poorbagher, Hadi; Nasrolahpourmoghadam, Maryam; Fernandes, Jorge Manuel de Oliveira (Peer reviewed; Journal article, 2022)