Blar i Nord Open Research Archive på forfatter "Sharko, Fedor"
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CircPrime : a web‑based platform for design of specific circular RNA primers
Sharko, Fedor; Rbbani, Md Golam; Siriyappagouder, Prabhugouda; Raeymaekers, Joost A.M.; Galindo-Villegas, Jorge; Nedoluzhko, Artem; Fernandes, Jorge Manuel de Oliveira (Peer reviewed; Journal article, 2023)Background: Circular RNAs (circRNAs) are covalently closed-loop RNAs with critical regulatory roles in cells. Tens of thousands of circRNAs have been unveiled due to the recent advances in high throughput RNA sequencing ... -
Embryonic temperature has long-term effects on muscle circRNA expression and somatic growth in Nile Tilapia
Rbbani, Md Golam; Murshed, Riaz; Siriyappagouder, Prabhugouda; Sharko, Fedor; Nedoluzhko, Artem; Joshi, Rajesh; Galindo-Villegas, Jorge; Raeymaekers, Joost A. M.; Fernandes, Jorge Manuel de Oliveira (Peer reviewed; Journal article, 2024)Embryonic temperature has a lasting impact on muscle phenotype in vertebrates, involving complex molecular mechanisms that encompass both protein-coding and non-coding genes. Circular RNAs (circRNAs) are a class of regulatory ... -
Genomic evidence supports the introgression between two sympatric stickleback species inhabiting the White Sea basin
Nedoluzhko, Artem; Sharko, Fedor; Tsygankova, Svetlana; Boulygina, Eugenia; Ibragimova, Amina; Teslyuk, Anton; Galindo-Villegas, Jorge; Rastorguev, Sergey (Peer reviewed; Journal article, 2021) -
Genomic signatures of freshwater adaptation in Pacific herring (Clupea pallasii)
Nedoluzhko, Artem; Orlova, Svetlana; Sharko, Fedor; Galindo-Villegas, Jorge; Rastorguev, Sergey (Peer reviewed; Journal article, 2022)Pacific herring (Clupea pallasii) is an essential target of commercial fishing in the North Pacific Ocean. Previous studies have suggested the existence of marine and lake ecological forms of this species within its range. ... -
Intergeneric Hybridization of Two Stickleback Species Leads to Introgression of Membrane-Associated Genes and Invasive TE Expansion
Nedoluzhko, Artem; Sharko, Fedor; Tsyganova, Svetlana; Boulygina, Eugenia S.; Slobodova, Natalia; Teslyuk, Anton; Galindo-Villegas, Jorge; Rastorguev, Sergey (Peer reviewed; Journal article, 2022)Interspecific hybridization has occurred relatively frequently during the evolution of vertebrates. This process usually abolishes reproductive isolation between the parental species. Moreover, it results in the exchange ... -
The novel circular RNA CircMef2c is positively associated with muscle growth in Nile tilapia
Rbbani, Golam; Nedoluzhko, Artem; Siriyappagouder, Prabhugouda; Sharko, Fedor; Galindo-Villegas, Jorge; Raeymaekers, Joost A.M.; Joshi, Rajesh; Fernandes, Jorge Manuel de Oliveira (Peer reviewed; Journal article, 2023)Muscle growth in teleosts is a complex biological process orchestrated by numerous protein-coding genes and non-coding RNAs. A few recent studies suggest that circRNAs are involved in teleost myogenesis, but the molecular ...