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dc.contributor.authorAsaf, Sajjad
dc.contributor.authorKhan, Abdul Latif
dc.contributor.authorKhan, Adil
dc.contributor.authorKhan, Arif
dc.contributor.authorKhan, Gulzar
dc.contributor.authorLee, In-Jung
dc.contributor.authorAl-Harrasi, Ahmed
dc.contributor.authorLubna, Lubna
dc.identifier.citationAsaf, S., Khan, A. L., Lubna, L., Khan, A., Khan, A., Khan, G., Lee, In-J. & Al-Harrasi, A. (2020). Expanded inverted repeat region with large scale inversion in the first complete plastid genome sequence of Plantago ovata. Scientific Reports, 10: 3881. doi:en_US
dc.description.abstractPlantago ovata (Plantaginaceae) is an economically and medicinally important species, however, least is known about its genomics and evolution. Here, we report the first complete plastome genome of P. ovata and comparison with previously published genomes of related species from Plantaginaceae. The results revealed that P. ovata plastome size was 162,116 bp and that it had typical quadripartite structure containing a large single copy region of 82,084 bp and small single copy region of 5,272 bp. The genome has a markedly higher inverted repeat (IR) size of 37.4 kb, suggesting large-scale inversion of 13.8 kb within the expanded IR regions. In addition, the P. ovata plastome contains 149 different genes, including 43 tRNA, 8 rRNA, and 98 protein-coding genes. The analysis revealed 139 microsatellites, of which 71 were in the non-coding regions. Approximately 32 forward, 34 tandem, and 17 palindromic repeats were detected. The complete genome sequences, 72 shared genes, matK gene, and rbcL gene from related species generated the same phylogenetic signals, and phylogenetic analysis revealed that P. ovata formed a single clade with P. maritima and P. media. The divergence time estimation as employed in BEAST revealed that P. ovata diverged from P. maritima and P. media about 11.0 million years ago (Mya; 95% highest posterior density, 10.06-12.25 Mya). In conclusion, P. ovata had significant variation in the IR region, suggesting a more stable P. ovata plastome genome than that of other Plantaginaceae species.en_US
dc.rightsNavngivelse 4.0 Internasjonal*
dc.titleExpanded inverted repeat region with large scale inversion in the first complete plastid genome sequence of Plantago ovataen_US
dc.typePeer revieweden_US
dc.typeJournal articleen_US
dc.rights.holder© 2020 The Author(s)en_US
dc.subject.nsiVDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470::Genetikk og genomikk: 474en_US
dc.source.journalScientific Reportsen_US
dc.relation.projectNational Research Foundation of Korea: 2017R1D1A1B04035601en_US
dc.relation.projectResearch Council Oman: BFP/RGP/EBR/18/005en_US

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Navngivelse 4.0 Internasjonal
Except where otherwise noted, this item's license is described as Navngivelse 4.0 Internasjonal